Randi Vita: search on Z-Library

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1

Better living through ontologies at the Immune Epitope Database

Vita, Randi, Overton, James A., Sette, Alessandro, Peters, Bjoern

Journal:

Year:

2017

Language:

english

File:

PDF, 672 KB

english, 2017

2

Immunodominance in allergic T-cell reactivity to Japanese cedar in different geographic cohorts

Oseroff, Carla, Pham, John, Frazier, April, Hinz, Denise, Sidney, John, Paul, Sinu, Greenbaum, Jason A., Vita, Randi, Peters, Bjoern, Schulten, Véronique, Sette, Alessandro

Journal:

Annals of Allergy, Asthma & Immunology

Year:

2016

Language:

english

File:

PDF, 998 KB

english, 2016

3

Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes

Lindestam Arlehamn, Cecilia S., Paul, Sinu, Mele, Federico, Huang, Charlie, Greenbaum, Jason A., Vita, Randi, Sidney, John, Peters, Bjoern, Sallusto, Federica, Sette, Alessandro

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 990 KB

english, 2015

4

Curation of complex, context-dependent immunological data

Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey, Muthu Sathiamurthy, John Mokili, Huynh-Hoa Bui, Philip E Bourne, Julia Ponomarenko, Romulo de Castro, Russell K Chan,

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 520 KB

english, 2006

5

SPAK kinase is a substrate and target of PKCθ in T-cell receptor-induced AP-1 activation pathway

Li, Yingqiu, Hu, Junru, Vita, Randi, Sun, Binggang, Tabata, Hiroki, Altman, Amnon

Journal:

The EMBO Journal

Year:

2004

Language:

english

File:

PDF, 303 KB

english, 2004

6

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability

Vita, Randi, Overton, James A, Mungall, Christopher J, Sette, Alessandro, Peters, Bjoern

Journal:

Year:

2018

Language:

english

File:

PDF, 379 KB

english, 2018

7

Reproducibility and conflicts in immune epitope data

Vita, Randi, Vasilevsky, Nicole, Bandrowski, Anita, Haendel, Melissa, Sette, Alessandro, Peters, Bjoern

Journal:

Year:

2016

Language:

english

File:

PDF, 262 KB

english, 2016

8

Towards Defining Molecular Determinants Recognized by Adaptive Immunity in Allergic Disease: An Inventory of the Available Data

Vaughan, Kerrie, Greenbaum, Jason, Kim, Yohan, Vita, Randi, Chung, Jo, Peters, Bjoern, Broide, David, Goodman, Richard, Grey, Howard, Sette, Alessandro

Journal:

Journal of Allergy (Hindawi Publishing Corporation)

Year:

2010

Language:

english

File:

PDF, 186 KB

english, 2010

9

The Biocurator: Connecting and Enhancing Scientific Data

Salimi, Nima, Vita, Randi

Journal:

PLoS Computational Biology

Year:

2006

Language:

english

File:

PDF, 88 KB

english, 2006

10

Query enhancement through the practical application of ontology: the IEDB and OBI

Randi Vita, James A Overton, Jason A Greenbaum…

Journal:

Journal of Biomedical Semantics

Year:

2013

Language:

english

File:

PDF, 420 KB

english, 2013

11

Reporting and connecting cell type names and gating definitions through ontologies

Overton, James A., Vita, Randi, Dunn, Patrick, Burel, Julie G., Bukhari, Syed Ahmad Chan, Cheung, Kei-Hoi, Kleinstein, Steven H., Diehl, Alexander D., Peters, Bjoern

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 613 KB

english, 2019

12

A structured model for immune exposures

Vita, Randi, Overton, James A, Dunn, Patrick, Cheung, Kei-Hoi, Kleinstein, Steven H, Sette, Alessandro, Peters, Bjoern

Journal:

Year:

2020

File:

PDF, 199 KB

2020

13

The Immune Epitope Database: How Data Are Entered and Retrieved

Fleri, Ward, Vaughan, Kerrie, Salimi, Nima, Vita, Randi, Peters, Bjoern, Sette, Alessandro

Journal:

Journal of Immunology Research

Year:

2017

Language:

english

File:

PDF, 2.98 MB

english, 2017

14

Identification of errors in the IEDB using ontologies

Vita, Randi, Overton, James A, Peters, Bjoern

Journal:

Year:

2018

Language:

english

File:

PDF, 536 KB

english, 2018

15

An ontology for major histocompatibility restriction

Vita, Randi, Overton, James A., Seymour, Emily, Sidney, John, Kaufman, Jim, Tallmadge, Rebecca L., Ellis, Shirley, Hammond, John, Butcher, Geoff W., Sette, Alessandro, Peters, Bjoern

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 1.76 MB

english, 2016

16

Antibody informatics for drug discovery

Shirai, Hiroki, Prades, Catherine, Vita, Randi, Marcatili, Paolo, Popovic, Bojana, Xu, Jianqing, Overington, John P., Hirayama, Kazunori, Soga, Shinji, Tsunoyama, Kazuhisa, Clark, Dominic, Lefranc, Ma

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2014

Language:

english

File:

PDF, 3.59 MB

english, 2014

17

IGF-I/BP-3 ADMINISTRATION PRESERVES HEPATIC HOMEOSTASIS AFTER THERMAL INJURY WHICH IS ASSOCIATED WITH INCREASES IN NO AND HEPATIC NF-κB

Jeschke, Marc G., Herndon, David N., Vita, Randi, Traber, Daniel L., Jauch, Karl-Walter, Barrow, Robert E.

Journal:

Year:

2001

File:

PDF, 5.55 MB

2001

18

Cell proliferation, apoptosis, NF-κB expression, enzyme, protein, and weight changes in livers of burned rats

Jeschke, Marc G., Low, J. F. Aili, Spies, Marcus, Vita, Randi, Hawkins, Hal K., Herndon, David N., Barrow, Robert E.

Journal:

American Journal of Physiology - Gastrointestinal and Liver Physiology

Year:

2001

Language:

english

File:

PDF, 1.23 MB

english, 2001

19

PROSTAGLANDIN E2-MEDIATED INHIBITION OF THE TRANSENDOTHELIAL MIGRATION OF HUMAN T LYMPHOCYTES

Vita, Randi, Schall-Napier, Amie, Oppenheimer-Marks, Nancy

Journal:

American Journal of Therapeutics

Year:

1995

File:

PDF, 433 KB

1995

20

A behind the scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts

Salimi, Nima, Edwards, Lindy, Foos, Gabriele, Greenbaum, Jason A., Martini, Sheridan, Reardon, Brian, Shackelford, Deborah, Vita, Randi, Zalman, Leora, Peters, Bjoern, Sette, Alessandro

Journal:

Year:

2020

File:

PDF, 241 KB

2020

21

Epitopes in ChEBI - A Collaboration with the IEDB

Josephs, Zara, Ennis, Marcus, Turner, Steve, Owen, Gareth, Peters, Bjoern, Vita, Randi, Steinbeck, Christoph

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 760 KB

english, 2010

22

EEG Abnormalities as a Neurophysiological Biomarker of Severity in Autism Spectrum Disorder: A Pilot Cohort Study

Nicotera, Antonio Gennaro, Hagerman, Randi Jenssen, Catania, Maria Vincenza, Buono, Serafino, Di Nuovo, Santo, Liprino, Elisa Maria, Stracuzzi, Emanuela, Giusto, Stefania, Di Vita, Giuseppina, Musumec

Journal:

Journal of Autism and Developmental Disorders

Year:

2019

Language:

english

File:

PDF, 631 KB

english, 2019

23

ImmunomeBrowser: A tool to aggregate and visualize complex and heterogeneous epitopes in reference protein

Dhanda, Sandeep Kumar, Vita, Randi, Ha, Brendan, Grifoni, Alba, Peters, Bjoern, Sette, Alessandro

Journal:

Year:

2018

Language:

english

File:

PDF, 250 KB

english, 2018

24

The Immune Epitope Database (IEDB): 2018 update

Vita, Randi, Mahajan, Swapnil, Overton, James A, Dhanda, Sandeep Kumar, Martini, Sheridan, Cantrell, Jason R, Wheeler, Daniel K, Sette, Alessandro, Peters, Bjoern

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

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